Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rho-binding antiterminator | YDC107_RS17540 | Not Available | Negative | 3577347 - 3577607 | 9670.44 |
| yaep family protein | YDC107_RS17545 | Not Available | Negative | 3577594 - 3577794 | 7214.59 |
| yaeq family protein | YDC107_RS17550 | Not Available | Positive | 3577960 - 3578505 | 20847.7 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | YDC107_RS17555 | Not Available | Positive | 3578502 - 3578924 | 15604.9 |
| envelope stress response activation lipoprotein nlpe | YDC107_RS17560 | Not Available | Positive | 3578938 - 3579648 | 25914.8 |
| yaef family permuted papain-like enzyme | YDC107_RS17565 | Not Available | Negative | 3579678 - 3580502 | 29929.9 |
| proline--trna ligase | YDC107_RS17570 | Not Available | Negative | 3580555 - 3582273 | 63642.3 |
| trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmo | YDC107_RS17575 | Not Available | Negative | 3582384 - 3583091 | 26396.8 |
| rcs stress response system protein rcsf | YDC107_RS17580 | Not Available | Negative | 3583088 - 3583492 | 14134.2 |
| methionine abc transporter substrate-binding lipoprotein metq | YDC107_RS17585 | Not Available | Negative | 3583610 - 3584425 | 29419.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





