Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transfer flavoprotein fixa | YDC107_RS16795 | Not Available | Positive | 3407774 - 3408544 | 27145.2 |
| electron transfer flavoprotein subunit alpha/fixb family protein | YDC107_RS16800 | Not Available | Positive | 3408559 - 3409500 | 33485.1 |
| fad-dependent oxidoreductase | YDC107_RS16805 | Not Available | Positive | 3409551 - 3410837 | 45689.6 |
| ferredoxin-like protein fixx | YDC107_RS16810 | Not Available | Positive | 3410834 - 3411121 | 10507.5 |
| mfs transporter | YDC107_RS16815 | Not Available | Positive | 3411180 - 3412511 | 48643.8 |
| glutathione-regulated potassium-efflux system oxidoreductase keff | YDC107_RS16820 | Not Available | Positive | 3412619 - 3413149 | 20156.1 |
| glutathione-regulated potassium-efflux system protein kefc | YDC107_RS16825 | Not Available | Positive | 3413142 - 3415004 | 67710.0 |
| type 3 dihydrofolate reductase | YDC107_RS16830 | Not Available | Positive | 3415195 - 3415674 | 18000.3 |
| type ii toxin-antitoxin system ccda family antitoxin | YDC107_RS16835 | Not Available | Positive | 3415760 - 3415993 | 8561.07 |
| s49 family peptidase | YDC107_RS16840 | Not Available | Positive | 3415996 - 3416310 | 11610.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





