Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i toxin-antitoxin system endodeoxyribonuclease toxin ralr | YDC107_RS24035 | Not Available | Negative | 4923088 - 4923237 | 5383.39 |
| Rect | YDC107_RS24040 | Not Available | Negative | 4923293 - 4924102 | 29805.8 |
| Exodeoxyribonuclease viii | YDC107_RS24045 | Not Available | Negative | 4924095 - 4926695 | 96339.2 |
| hypothetical protein | YDC107_RS24050 | Not Available | Negative | 4926797 - 4927072 | 10046.3 |
| Hypothetical protein | YDC107_RS24055 | Not Available | Negative | 4927147 - 4927317 | 6584.08 |
| Kil protein | YDC107_RS24060 | Not Available | Negative | 4927317 - 4927538 | 8390.25 |
| Superinfection exclusion protein b | YDC107_RS24065 | Not Available | Positive | 4927980 - 4928468 | 19244.8 |
| Hypothetical protein | YDC107_RS24070 | Not Available | Negative | 4928465 - 4928620 | 5768.84 |
| hypothetical protein | YDC107_RS24075 | Not Available | Negative | 4928631 - 4928810 | 6783.25 |
| Regulatory protein ci | YDC107_RS24085 | Not Available | Negative | 4929053 - 4929472 | 16180.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





