Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system effector espx1 | YDC107_RS16695 | Not Available | Negative | 3383914 - 3385335 | 55868.8 |
| 30s ribosomal protein s20 | YDC107_RS16700 | Not Available | Negative | 3385819 - 3386082 | 9684.94 |
| duf2575 family protein | YDC107_RS16705 | Not Available | Positive | 3386185 - 3386403 | 7890.84 |
| bifunctional riboflavin kinase/fad synthetase | YDC107_RS16710 | Not Available | Positive | 3386411 - 3387352 | 34736.4 |
| isoleucine--trna ligase | YDC107_RS16715 | Not Available | Positive | 3387395 - 3390211 | 104229.0 |
| signal peptidase ii | YDC107_RS16720 | Not Available | Positive | 3390211 - 3390705 | 18129.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | YDC107_RS16725 | Not Available | Positive | 3390793 - 3391242 | 16096.0 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | YDC107_RS16730 | Not Available | Positive | 3391244 - 3392194 | 34776.6 |
| ribonucleoside hydrolase rihc | YDC107_RS16735 | Not Available | Positive | 3392260 - 3393174 | 32662.8 |
| duf805 domain-containing protein | YDC107_RS16740 | Not Available | Positive | 3393196 - 3393561 | 13617.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





