Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2541 family protein | YDC107_RS16645 | Not Available | Negative | 3371987 - 3372391 | 14505.4 |
| molecular chaperone dnak | YDC107_RS16650 | Not Available | Positive | 3372766 - 3374682 | 69065.8 |
| molecular chaperone dnaj | YDC107_RS16655 | Not Available | Positive | 3374771 - 3375901 | 41046.7 |
| type i toxin-antitoxin system toxin mokc | YDC107_RS16660 | Not Available | Negative | 3376005 - 3376157 | 5501.89 |
| na+/h+ antiporter nhaa | YDC107_RS16665 | Not Available | Positive | 3376743 - 3377909 | 41332.2 |
| transcriptional activator nhar | YDC107_RS16670 | Not Available | Positive | 3377975 - 3378874 | 34040.0 |
| hypothetical protein | YDC107_RS16675 | Not Available | Negative | 3378912 - 3379871 | 35884.4 |
| fimbrial biogenesis outer membrane usher protein | YDC107_RS16680 | Not Available | Negative | 3379884 - 3382334 | 92147.8 |
| fimbria/pilus periplasmic chaperone | YDC107_RS16685 | Not Available | Negative | 3382347 - 3383030 | 25325.9 |
| fimbrial protein | YDC107_RS16690 | Not Available | Negative | 3383080 - 3383613 | 19101.5 |
Pathways
79 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





