Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mdr efflux pump acrab transcriptional activator roba | YDC107_RS16545 | Not Available | Negative | 3352796 - 3353665 | 33127.7 |
| protein crea | YDC107_RS16550 | Not Available | Positive | 3353876 - 3354349 | 17108.8 |
| two-component system response regulator creb | YDC107_RS16555 | Not Available | Positive | 3354362 - 3355051 | 26156.8 |
| two-component system sensor histidine kinase crec | YDC107_RS16560 | Not Available | Positive | 3355051 - 3356475 | 52221.4 |
| cell envelope integrity protein cred | YDC107_RS16565 | Not Available | Positive | 3356533 - 3357885 | 49887.8 |
| is200/is605-like element is200c family transposase | YDC107_RS16570 | Not Available | Positive | 3358071 - 3358529 | 18028.0 |
| two-component system response regulator arca | YDC107_RS16575 | Not Available | Negative | 3358657 - 3359373 | 27293.6 |
| protein yjjy | YDC107_RS16580 | Not Available | Positive | 3359469 - 3359609 | 4886.09 |
| trna/rrna methyltransferase | YDC107_RS16585 | Not Available | Positive | 3360009 - 3360695 | 25332.6 |
| thr operon leader peptide | YDC107_RS16590 | Not Available | Positive | 3360909 - 3360974 | 2138.61 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





