Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphopentomutase | YDC107_RS16445 | Not Available | Positive | 3333752 - 3334975 | 44372.4 |
| purine-nucleoside phosphorylase | YDC107_RS16450 | Not Available | Positive | 3335032 - 3335751 | 25951.4 |
| helix-turn-helix domain-containing protein | YDC107_RS16455 | Not Available | Negative | 3335912 - 3336175 | 10042.5 |
| lipoate--protein ligase lpla | YDC107_RS16460 | Not Available | Negative | 3336207 - 3337223 | 37973.0 |
| ytjb family periplasmic protein | YDC107_RS16465 | Not Available | Negative | 3337251 - 3337892 | 23999.1 |
| phosphoserine phosphatase | YDC107_RS16470 | Not Available | Positive | 3337998 - 3338966 | 35044.8 |
| dna repair protein rada | YDC107_RS16475 | Not Available | Positive | 3339015 - 3340397 | 49445.0 |
| multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase nadr | YDC107_RS16480 | Not Available | Positive | 3340418 - 3341650 | 47334.4 |
| s49 family peptidase | YDC107_RS28475 | Not Available | Negative | 3341922 - 3342038 | 4250.08 |
| duf1471 domain-containing protein | YDC107_RS16490 | Not Available | Negative | 3342111 - 3342323 | 7355.82 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





