Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2501 domain-containing protein yjja | YDC107_RS15975 | Not Available | Negative | 3266736 - 3267230 | 17421.7 |
| dna replication protein dnac | YDC107_RS15980 | Not Available | Negative | 3267279 - 3268016 | 27936.8 |
| primosomal protein dnat | YDC107_RS15985 | Not Available | Negative | 3268019 - 3268558 | 19460.1 |
| threonine/serine exporter | YDC107_RS15990 | Not Available | Negative | 3268666 - 3269139 | 17031.6 |
| threonine/serine thre exporter family protein | YDC107_RS15995 | Not Available | Negative | 3269130 - 3269900 | 27952.6 |
| helix-turn-helix domain-containing protein | YDC107_RS16000 | Not Available | Positive | 3270520 - 3271245 | 27033.6 |
| dna-binding transcriptional activator bglj | YDC107_RS16005 | Not Available | Positive | 3271203 - 3271880 | 25593.1 |
| siderophore-iron reductase fhuf | YDC107_RS16010 | Not Available | Negative | 3271918 - 3272706 | 29923.0 |
| duf1435 domain-containing protein | YDC107_RS16015 | Not Available | Positive | 3272847 - 3273083 | 8665.29 |
| Trna-leu | Not Available | Not Available | Positive | 3273122 - 3273208 | Not Available |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





