Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybdd/yjix family protein | YDC107_RS15925 | Not Available | Negative | 3252141 - 3252344 | 7729.24 |
| pyruvate/proton symporter btst | YDC107_RS15930 | Not Available | Negative | 3252462 - 3254612 | 77385.6 |
| methyl-accepting chemotaxis protein | YDC107_RS15935 | Not Available | Positive | 3254989 - 3256653 | 59778.9 |
| trap transporter large permease | YDC107_RS15940 | Not Available | Negative | 3256696 - 3257967 | 45501.4 |
| trap transporter small permease | YDC107_RS15945 | Not Available | Negative | 3257964 - 3258437 | 17769.5 |
| c4-dicarboxylate trap transporter substrate-binding protein | YDC107_RS15950 | Not Available | Negative | 3258501 - 3259472 | 36282.1 |
| na+/h+ antiporter | YDC107_RS15955 | Not Available | Positive | 3260163 - 3261815 | 60207.8 |
| gntr family transcriptional regulator | YDC107_RS15960 | Not Available | Negative | 3261986 - 3262891 | 35050.1 |
| zinc-binding alcohol dehydrogenase family protein | YDC107_RS15965 | Not Available | Positive | 3263030 - 3264052 | 36715.2 |
| phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | YDC107_RS15970 | Not Available | Negative | 3264191 - 3266482 | 85562.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





