Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rpn family recombination-promoting nuclease/putative transposase | YDC107_RS15880 | Not Available | Positive | 3239323 - 3240243 | 35856.3 |
| hypothetical protein | YDC107_RS15885 | Not Available | Positive | 3240471 - 3240551 | 3103.82 |
| s49 family peptidase | YDC107_RS28440 | Not Available | Positive | 3240649 - 3241531 | 34068.8 |
| duf1524 domain-containing protein | YDC107_RS28445 | Not Available | Positive | 3241579 - 3242742 | 45252.0 |
| endoribonuclease syme | YDC107_RS15895 | Not Available | Negative | 3242789 - 3243130 | 12338.8 |
| type i restriction-modification system specificity subunit | YDC107_RS15900 | Not Available | Negative | 3243359 - 3244726 | 50046.7 |
| type i restriction-modification system methyltransferase | YDC107_RS15905 | Not Available | Negative | 3244723 - 3246312 | 59292.8 |
| type i restriction-modification system endonuclease | YDC107_RS15910 | Not Available | Negative | 3246514 - 3250026 | 134104.0 |
| adenine/cytosine-specific restriction endonuclease mrr | YDC107_RS15915 | Not Available | Positive | 3250214 - 3251128 | 33610.9 |
| gtpase | YDC107_RS15920 | Not Available | Negative | 3251174 - 3252130 | 35680.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





