Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntp family permease | YDC107_RS15645 | Not Available | Negative | 3192565 - 3193914 | 47006.8 |
| xylonate dehydratase yjhg | YDC107_RS15650 | Not Available | Negative | 3194021 - 3195988 | 70021.0 |
| dihydrodipicolinate synthase family protein | YDC107_RS15655 | Not Available | Negative | 3195999 - 3196904 | 32723.5 |
| iclr family transcriptional regulator | YDC107_RS15660 | Not Available | Negative | 3196909 - 3197697 | 29878.3 |
| deor/glpr family dna-binding transcription regulator | YDC107_RS15665 | Not Available | Negative | 3198000 - 3198782 | 29269.3 |
| ribulose-phosphate 3 epimerase family protein | YDC107_RS15670 | Not Available | Negative | 3198799 - 3199431 | 23215.7 |
| sgca family pts sugar transporter subunit iia | YDC107_RS15675 | Not Available | Negative | 3199443 - 3199874 | 15638.6 |
| btpa family protein sgcq | YDC107_RS15680 | Not Available | Negative | 3200005 - 3200811 | 29356.3 |
| pts sugar transporter subunit iic sgcc | YDC107_RS15685 | Not Available | Negative | 3200824 - 3202137 | 46687.4 |
| pts sugar transporter subunit iib sgcb | YDC107_RS15690 | Not Available | Negative | 3202149 - 3202427 | 9804.04 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





