Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s49 family peptidase | YDC107_RS15595 | Not Available | Positive | 3184322 - 3184793 | 17385.8 |
| jab domain-containing protein | YDC107_RS15600 | Not Available | Positive | 3184809 - 3185285 | 17688.4 |
| duf987 domain-containing protein | YDC107_RS15605 | Not Available | Positive | 3185348 - 3185569 | 8409.23 |
| type iv toxin-antitoxin system yeeu family antitoxin | YDC107_RS15610 | Not Available | Positive | 3185732 - 3186100 | 13625.2 |
| s49 family peptidase | YDC107_RS15615 | Not Available | Positive | 3186190 - 3186288 | 3819.68 |
| s-methyl-5-thioribose kinase | YDC107_RS15620 | Not Available | Positive | 3187027 - 3188286 | 47660.9 |
| s-methyl-5-thioribose-1-phosphate isomerase | YDC107_RS15625 | Not Available | Positive | 3188296 - 3189411 | 40363.2 |
| l-fuculose-phosphate aldolase | YDC107_RS15630 | Not Available | Positive | 3189442 - 3190083 | 23180.2 |
| grp family sugar transporter | YDC107_RS15635 | Not Available | Positive | 3190187 - 3191191 | 35901.8 |
| sugar-binding transcriptional regulator | YDC107_RS15640 | Not Available | Negative | 3191232 - 3192218 | 36113.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





