Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YDC107_RS15525 | Not Available | Positive | 3172235 - 3172837 | 23690.5 |
| yfji family protein | YDC107_RS15540 | Not Available | Negative | 3173159 - 3174643 | 55746.4 |
| gtpase family protein | YDC107_RS15545 | Not Available | Positive | 3175874 - 3176746 | 32441.8 |
| s49 family peptidase | YDC107_RS15550 | Not Available | Positive | 3177119 - 3179512 | 80962.0 |
| is66-like element accessory protein tnpa | YDC107_RS15555 | Not Available | Positive | 3179597 - 3180022 | 15906.0 |
| is66 family insertion sequence element accessory protein tnpb | YDC107_RS15560 | Not Available | Positive | 3180019 - 3180369 | 13161.0 |
| is66-like element isec23 family transposase | YDC107_RS15565 | Not Available | Positive | 3180400 - 3182013 | 61275.1 |
| s49 family peptidase | YDC107_RS15570 | Not Available | Positive | 3182044 - 3182778 | 26053.9 |
| s49 family peptidase | YDC107_RS15575 | Not Available | Positive | 3182849 - 3183044 | 7251.55 |
| duf932 domain-containing protein | YDC107_RS15585 | Not Available | Positive | 3183162 - 3183980 | 31197.3 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





