Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| esterase-like activity of phytase family protein | YDC107_RS15460 | Not Available | Positive | 3164647 - 3166005 | 49070.4 |
| is66 family transposase | YDC107_RS15465 | Not Available | Negative | 3166244 - 3167629 | 51818.1 |
| is66 family insertion sequence element accessory protein tnpb | YDC107_RS15470 | Not Available | Negative | 3167679 - 3168026 | 12771.9 |
| is66-like element accessory protein tnpa | YDC107_RS15475 | Not Available | Negative | 3168023 - 3168403 | 14056.0 |
| zinc-ribbon domain-containing protein | YDC107_RS15485 | Not Available | Negative | 3168758 - 3169192 | 16525.8 |
| putative zinc ribbon protein | YDC107_RS15490 | Not Available | Negative | 3169180 - 3169581 | 15607.3 |
| inovirus gp2 family protein | YDC107_RS15495 | Not Available | Negative | 3169841 - 3170410 | 21881.2 |
| hypothetical protein | YDC107_RS28425 | Not Available | Positive | 3170610 - 3170810 | 7414.29 |
| hypothetical protein | YDC107_RS28780 | Not Available | Negative | 3171024 - 3171191 | 6160.32 |
| helix-turn-helix transcriptional regulator | YDC107_RS15520 | Not Available | Positive | 3171934 - 3172140 | 7761.52 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





