Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent fe(3+) dicitrate receptor feca | YDC107_RS15410 | Not Available | Negative | 3158007 - 3160331 | 85312.3 |
| ferric citrate uptake sigma factor regulator fecr | YDC107_RS15415 | Not Available | Negative | 3160418 - 3161371 | 35564.1 |
| rna polymerase sigma factor feci | YDC107_RS15420 | Not Available | Negative | 3161368 - 3161889 | 19481.5 |
| protein ykie | YDC107_RS28095 | Not Available | Positive | 3162026 - 3162094 | 2720.32 |
| s49 family peptidase | YDC107_RS15425 | Not Available | Positive | 3162181 - 3162878 | 24890.9 |
| s49 family peptidase | YDC107_RS28775 | Not Available | Negative | 3162889 - 3162958 | 2186.67 |
| s49 family peptidase | YDC107_RS28420 | Not Available | Positive | 3163020 - 3163169 | 5695.86 |
| s49 family peptidase | YDC107_RS15435 | Not Available | Positive | 3163196 - 3163300 | 4184.76 |
| biofilm development regulator ymgb/arir family protein | YDC107_RS15445 | Not Available | Positive | 3163603 - 3163896 | 11348.8 |
| s49 family peptidase | YDC107_RS15455 | Not Available | Negative | 3164234 - 3164365 | 4962.7 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





