Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is3-like element is911 family transposase | YDC107_RS15355 | Not Available | Positive | 3147712 - 3148879 | 45147.3 |
| s49 family peptidase | YDC107_RS15360 | Not Available | Negative | 3148889 - 3149227 | 12399.5 |
| bcct family transporter | YDC107_RS15370 | Not Available | Negative | 3149290 - 3151287 | 73747.5 |
| is3-like element is600 family transposase | YDC107_RS15375 | Not Available | Negative | 3151441 - 3152597 | 44480.2 |
| s49 family peptidase | YDC107_RS15380 | Not Available | Positive | 3152664 - 3153448 | 28432.4 |
| hypothetical protein | YDC107_RS15385 | Not Available | Positive | 3153531 - 3153788 | 9465.12 |
| s49 family peptidase | YDC107_RS15390 | Not Available | Negative | 3154345 - 3155111 | 28105.1 |
| fe(3+) dicitrate abc transporter permease subunit fecd | YDC107_RS15395 | Not Available | Negative | 3155112 - 3156068 | 34133.7 |
| iron-dicitrate abc transporter permease fecc | YDC107_RS15400 | Not Available | Negative | 3156065 - 3157063 | 34894.9 |
| fe(3+) dicitrate abc transporter substrate-binding protein fecb | YDC107_RS15405 | Not Available | Negative | 3157060 - 3157962 | 33108.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





