Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ytga | YDC107_RS28090 | Not Available | Positive | 3127955 - 3128005 | 1763.19 |
| lps export abc transporter permease lptf | YDC107_RS15255 | Not Available | Positive | 3128068 - 3129168 | 40360.1 |
| lps export abc transporter permease lptg | YDC107_RS15260 | Not Available | Positive | 3129168 - 3130250 | 39621.0 |
| helicase hera-like c-terminal domain-containing protein | YDC107_RS15265 | Not Available | Negative | 3130411 - 3131913 | 54383.6 |
| dna-binding transcriptional regulator idnr | YDC107_RS15270 | Not Available | Negative | 3131991 - 3132989 | 37569.5 |
| gnt-ii system l-idonate transporter | YDC107_RS15275 | Not Available | Negative | 3133056 - 3134375 | 46086.3 |
| gluconate 5-dehydrogenase | YDC107_RS15280 | Not Available | Negative | 3134438 - 3135202 | 27564.3 |
| l-idonate 5-dehydrogenase | YDC107_RS15285 | Not Available | Negative | 3135226 - 3136257 | 37148.7 |
| gluconokinase | YDC107_RS15290 | Not Available | Positive | 3136474 - 3137037 | 21005.2 |
| nadph-dependent aldehyde reductase ahr | YDC107_RS15295 | Not Available | Negative | 3137041 - 3138060 | 36519.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





