Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class 1 fructose-bisphosphatase | YDC107_RS15100 | Not Available | Negative | 3095866 - 3096864 | 36836.0 |
| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligase | YDC107_RS15105 | Not Available | Positive | 3097040 - 3098413 | 49866.0 |
| ribosome biogenesis factor yjga | YDC107_RS15110 | Not Available | Negative | 3098565 - 3099116 | 21360.5 |
| metalloprotease pmba | YDC107_RS15115 | Not Available | Positive | 3099210 - 3100562 | 48358.4 |
| cytochrome b562 | YDC107_RS15120 | Not Available | Positive | 3100746 - 3101132 | 13989.7 |
| type ii toxin-antitoxin system relb/dinj family antitoxin | YDC107_RS15130 | Not Available | Positive | 3101324 - 3101566 | 9126.09 |
| type ii toxin-antitoxin system rele family toxin | YDC107_RS15135 | Not Available | Positive | 3101556 - 3101846 | 11367.8 |
| anaerobic ribonucleoside-triphosphate reductase-activating protein | YDC107_RS15140 | Not Available | Negative | 3101847 - 3102311 | 17430.9 |
| anaerobic ribonucleoside-triphosphate reductase | YDC107_RS15145 | Not Available | Negative | 3102496 - 3104634 | 80043.0 |
| alpha,alpha-phosphotrehalase | YDC107_RS15150 | Not Available | Negative | 3105028 - 3106683 | 63723.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





