Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter assembly complex protein tama | YDC107_RS15050 | Not Available | Positive | 3083645 - 3085378 | 64799.7 |
| autotransporter assembly complex protein tamb | YDC107_RS15055 | Not Available | Positive | 3085375 - 3089154 | 136841.0 |
| gamma-glutamylcyclotransferase | YDC107_RS15060 | Not Available | Positive | 3089157 - 3089498 | 12867.2 |
| type ii toxin-antitoxin system antitoxin chps | YDC107_RS15065 | Not Available | Positive | 3089710 - 3089961 | 9332.18 |
| endoribonuclease toxin chpb | YDC107_RS15070 | Not Available | Positive | 3089955 - 3090305 | 12454.2 |
| inorganic diphosphatase | YDC107_RS15075 | Not Available | Negative | 3090384 - 3090914 | 19704.6 |
| galactofuranose abc transporter substrate-binding protein ytfq | YDC107_RS15080 | Not Available | Positive | 3091224 - 3092180 | 34345.5 |
| galactofuranose abc transporter, atp-binding protein ytfr | YDC107_RS15085 | Not Available | Positive | 3092313 - 3093815 | 55307.5 |
| galactofuranose abc transporter, atp-binding protein ytft | YDC107_RS15090 | Not Available | Positive | 3093829 - 3094851 | 35542.1 |
| galactofuranose abc transporter, permease protein yjff | YDC107_RS15095 | Not Available | Positive | 3094838 - 3095833 | 34994.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





