Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts ascorbate transporter subunit iic | YDC107_RS14905 | Not Available | Positive | 3059522 - 3060919 | 50717.5 |
| pts ascorbate transporter subunit iib | YDC107_RS14910 | Not Available | Positive | 3060935 - 3061240 | 10896.3 |
| pts ascorbate transporter subunit iia | YDC107_RS14915 | Not Available | Positive | 3061250 - 3061714 | 17226.5 |
| 3-keto-l-gulonate-6-phosphate decarboxylase ulad | YDC107_RS14920 | Not Available | Positive | 3061728 - 3062378 | 23650.4 |
| l-ribulose-5-phosphate 3-epimerase ulae | YDC107_RS14925 | Not Available | Positive | 3062388 - 3063242 | 32036.4 |
| l-ribulose-5-phosphate 4-epimerase ulaf | YDC107_RS14930 | Not Available | Positive | 3063242 - 3063928 | 25281.2 |
| duf1471 family protein yjfy | YDC107_RS14935 | Not Available | Negative | 3064057 - 3064332 | 10129.9 |
| 30s ribosomal protein s6 | YDC107_RS14940 | Not Available | Positive | 3064659 - 3065054 | 15187.9 |
| primosomal replication protein n | YDC107_RS14945 | Not Available | Positive | 3065061 - 3065375 | 11472.9 |
| 30s ribosomal protein s18 | YDC107_RS14950 | Not Available | Positive | 3065380 - 3065607 | 8986.94 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





