Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 3032103 - 3032178 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3032214 - 3032289 | Not Available |
| hypothetical protein | YDC107_RS14765 | Not Available | Positive | 3032523 - 3032576 | 2056.38 |
| trna epoxyqueuosine(34) reductase queg | YDC107_RS14770 | Not Available | Negative | 3032559 - 3033698 | 42989.3 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | YDC107_RS14775 | Not Available | Positive | 3033697 - 3035244 | 54539.4 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | YDC107_RS14780 | Not Available | Positive | 3035216 - 3035677 | 16854.0 |
| n-acetylmuramoyl-l-alanine amidase amib | YDC107_RS14785 | Not Available | Positive | 3035696 - 3037033 | 47899.9 |
| dna mismatch repair endonuclease mutl | YDC107_RS14790 | Not Available | Positive | 3037043 - 3038890 | 67906.6 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | YDC107_RS14795 | Not Available | Positive | 3038883 - 3039833 | 35081.2 |
| rna chaperone hfq | YDC107_RS14800 | Not Available | Positive | 3039919 - 3040227 | 11167.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





