Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4156 domain-containing protein | YDC107_RS14655 | Not Available | Positive | 3013189 - 3013542 | 11959.2 |
| yjej family protein | YDC107_RS14660 | Not Available | Negative | 3013592 - 3014461 | 32978.9 |
| ef-p beta-lysylation protein epmb | YDC107_RS14665 | Not Available | Negative | 3014696 - 3015724 | 38661.8 |
| elongation factor p | YDC107_RS14670 | Not Available | Positive | 3015766 - 3016332 | 20592.4 |
| lipoprotein antitoxin entericidin a | YDC107_RS14675 | Not Available | Positive | 3016384 - 3016509 | 4329.45 |
| lipoprotein toxin entericidin b | YDC107_RS14680 | Not Available | Positive | 3016620 - 3016766 | 4809.81 |
| quaternary ammonium compound efflux smr transporter suge | YDC107_RS14685 | Not Available | Positive | 3016941 - 3017258 | 10901.0 |
| lipocalin blc | YDC107_RS14690 | Not Available | Negative | 3017255 - 3017788 | 19896.7 |
| blaec family class c beta-lactamase | YDC107_RS14695 | Not Available | Negative | 3017876 - 3019009 | 41525.0 |
| fumarate reductase subunit frdd | YDC107_RS14700 | Not Available | Negative | 3019072 - 3019431 | 13123.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





