Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-phe | Not Available | Not Available | Positive | 3002932 - 3003007 | Not Available |
| transcriptional regulator | YDC107_RS14610 | Not Available | Negative | 3003114 - 3003689 | 21932.3 |
| protein-disulfide reductase dsbd | YDC107_RS14615 | Not Available | Negative | 3003726 - 3005423 | 61802.7 |
| divalent cation tolerance protein cuta | YDC107_RS14620 | Not Available | Negative | 3005399 - 3005737 | 12331.7 |
| anaerobic c4-dicarboxylate transporter dcua | YDC107_RS14625 | Not Available | Negative | 3005852 - 3007153 | 45753.5 |
| aspartate ammonia-lyase | YDC107_RS14630 | Not Available | Negative | 3007271 - 3008707 | 52359.2 |
| fxsa family protein | YDC107_RS14635 | Not Available | Positive | 3009044 - 3009520 | 17679.1 |
| l-methionine/branched-chain amino acid transporter | YDC107_RS14640 | Not Available | Negative | 3009536 - 3010792 | 44913.4 |
| co-chaperone groes | YDC107_RS14645 | Not Available | Positive | 3011068 - 3011361 | 10387.6 |
| chaperonin groel | YDC107_RS14650 | Not Available | Positive | 3011405 - 3013051 | 57332.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





