Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate abc transporter atp-binding protein | YDC107_RS14445 | Not Available | Negative | 2965253 - 2966041 | 29457.4 |
| voc family metalloprotein yjdn | YDC107_RS14450 | Not Available | Negative | 2966174 - 2966617 | 16172.2 |
| zinc ribbon domain-containing protein yjdm | YDC107_RS14455 | Not Available | Negative | 2966777 - 2967112 | 12345.7 |
| clamp-binding protein crfc | YDC107_RS14460 | Not Available | Positive | 2967514 - 2969742 | 84319.9 |
| yjcz-like family protein | YDC107_RS14465 | Not Available | Positive | 2969739 - 2970617 | 32919.8 |
| glycine betaine/l-proline transporter prop | YDC107_RS14470 | Not Available | Positive | 2970881 - 2972383 | 54823.1 |
| lpxt activity modulator pmrr | YDC107_RS14475 | Not Available | Positive | 2972495 - 2972584 | 3465.23 |
| two-component system sensor histidine kinase pmrb | YDC107_RS14480 | Not Available | Negative | 2972560 - 2973660 | 41351.3 |
| two-component system response regulator basr | YDC107_RS14485 | Not Available | Negative | 2973661 - 2974329 | 25032.3 |
| phosphoethanolamine transferase epta | YDC107_RS14490 | Not Available | Negative | 2974326 - 2975969 | 61642.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





