Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | YDC107_RS14395 | Not Available | Negative | 2956946 - 2958082 | 42065.9 |
| phosphonate c-p lyase system protein phnl | YDC107_RS14400 | Not Available | Negative | 2958079 - 2958759 | 24759.0 |
| phosphonate c-p lyase system protein phnk | YDC107_RS14405 | Not Available | Negative | 2958870 - 2959628 | 27853.6 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p-lyase phnj | YDC107_RS14410 | Not Available | Negative | 2959625 - 2960470 | 31833.9 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | YDC107_RS14415 | Not Available | Negative | 2960463 - 2961527 | 38912.1 |
| phosphonate c-p lyase system protein phnh | YDC107_RS14420 | Not Available | Negative | 2961527 - 2962111 | 20970.6 |
| phosphonate c-p lyase system protein phng | YDC107_RS14425 | Not Available | Negative | 2962108 - 2962560 | 16597.8 |
| phosphonate metabolism transcriptional regulator phnf | YDC107_RS14430 | Not Available | Negative | 2962561 - 2963286 | 27593.0 |
| phosphonate abc transporter, permease protein phne | YDC107_RS14435 | Not Available | Negative | 2963307 - 2964086 | 28399.3 |
| phosphonate abc transporter substrate-binding protein | YDC107_RS14440 | Not Available | Negative | 2964212 - 2965228 | 37372.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





