Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux transporter outer membrane subunit mdtp | YDC107_RS14345 | Not Available | Negative | 2947163 - 2948629 | 53483.3 |
| multidrug efflux transporter permease subunit mdto | YDC107_RS14350 | Not Available | Negative | 2948626 - 2950677 | 76176.2 |
| multidrug efflux transporter periplasmic adaptor subunit mdtn | YDC107_RS14355 | Not Available | Negative | 2950677 - 2951708 | 36884.2 |
| ytca family lipoprotein | YDC107_RS14360 | Not Available | Negative | 2951727 - 2952002 | 10237.2 |
| alkyl sulfatase yjcs | YDC107_RS14365 | Not Available | Negative | 2952211 - 2954196 | 73184.0 |
| rpib/laca/lacb family sugar-phosphate isomerase | YDC107_RS14370 | Not Available | Positive | 2954449 - 2954766 | 11628.9 |
| ddrrrql repeat protein yjdp | YDC107_RS14375 | Not Available | Positive | 2954835 - 2955164 | 13450.3 |
| phosphonate metabolism protein phnp | YDC107_RS14380 | Not Available | Negative | 2955199 - 2955957 | 27940.4 |
| aminoalkylphosphonate n-acetyltransferase | YDC107_RS14385 | Not Available | Negative | 2955959 - 2956393 | 16584.8 |
| ribose 1,5-bisphosphokinase | YDC107_RS14390 | Not Available | Negative | 2956380 - 2956946 | 20890.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





