Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-di-gmp phosphodiesterase pdec | YDC107_RS14245 | Not Available | Positive | 2922548 - 2924134 | 60563.4 |
| superoxide response transcriptional regulator soxs | YDC107_RS14250 | Not Available | Negative | 2924137 - 2924460 | 12911.6 |
| redox-sensitive transcriptional activator soxr | YDC107_RS14255 | Not Available | Positive | 2924546 - 2925010 | 17235.8 |
| guanine/hypoxanthine transporter ghxp | YDC107_RS14260 | Not Available | Positive | 2925556 - 2926905 | 45714.4 |
| na+/h+ antiporter | YDC107_RS14265 | Not Available | Positive | 2927056 - 2928705 | 60527.5 |
| is5-like element isec35 family transposase | YDC107_RS14270 | Not Available | Positive | 2928848 - 2929765 | 34337.8 |
| t3ss effector pentapeptide repeat protein espx5 | YDC107_RS14275 | Not Available | Negative | 2929919 - 2931211 | 49325.0 |
| cation/acetate symporter actp | YDC107_RS14280 | Not Available | Negative | 2931389 - 2933038 | 59213.7 |
| duf485 domain-containing protein | YDC107_RS14285 | Not Available | Negative | 2933035 - 2933349 | 11672.3 |
| acetate--coa ligase | YDC107_RS14290 | Not Available | Negative | 2933575 - 2935533 | 72011.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





