Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar-binding transcriptional regulator | YDC107_RS14045 | Not Available | Negative | 2878201 - 2879148 | 34948.8 |
| 23s rrna pseudouridine(2604) synthase rluf | YDC107_RS14050 | Not Available | Positive | 2879496 - 2880368 | 32424.4 |
| duf3811 domain-containing protein | YDC107_RS14055 | Not Available | Negative | 2880369 - 2880641 | 10546.7 |
| lysine-sensitive aspartokinase 3 | YDC107_RS14060 | Not Available | Negative | 2880894 - 2882243 | 48520.6 |
| glucose-6-phosphate isomerase | YDC107_RS14065 | Not Available | Positive | 2882768 - 2884417 | 61531.1 |
| exopolysaccharide production protein yjbe | YDC107_RS14070 | Not Available | Positive | 2884771 - 2885013 | 7414.52 |
| yjbf family lipoprotein | YDC107_RS14075 | Not Available | Positive | 2885200 - 2885838 | 23756.1 |
| capsule biosynthesis gfcc family protein | YDC107_RS14080 | Not Available | Positive | 2885835 - 2886572 | 26263.4 |
| yjbh domain-containing protein | YDC107_RS14085 | Not Available | Positive | 2886572 - 2888668 | 78481.0 |
| periplasmic protein | YDC107_RS14090 | Not Available | Negative | 2888715 - 2888993 | 10049.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





