Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine synthase | YDC107_RS13995 | Not Available | Positive | 2865305 - 2868988 | 136034.0 |
| na/pi cotransporter family protein | YDC107_RS14000 | Not Available | Positive | 2869208 - 2870839 | 59470.7 |
| is3-like element is1397 family transposase | YDC107_RS14005 | Not Available | Positive | 2870925 - 2872273 | 51781.4 |
| dipeptidase pepe | YDC107_RS14010 | Not Available | Negative | 2872364 - 2873053 | 24561.7 |
| l-sorbose 1-phosphate reductase | YDC107_RS14015 | Not Available | Negative | 2873435 - 2874664 | 44731.2 |
| pts system mannose/fructose/sorbose family transporter subunit iid | YDC107_RS14020 | Not Available | Negative | 2874716 - 2875540 | 29499.9 |
| pts mannose/fructose/sorbose transporter subunit iic | YDC107_RS14025 | Not Available | Negative | 2875551 - 2876348 | 27962.0 |
| pts system mannose/fructose/n-acetylgalactosamine-transporter subunit iib | YDC107_RS14030 | Not Available | Negative | 2876414 - 2876908 | 18405.2 |
| mannose/fructose/sorbose pts transporter subunit iia | YDC107_RS14035 | Not Available | Negative | 2876908 - 2877315 | 14779.8 |
| sdr family oxidoreductase | YDC107_RS14040 | Not Available | Negative | 2877325 - 2878131 | 29040.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





