Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 2851626 - 2851701 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2851895 - 2854798 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2854893 - 2855008 | Not Available |
| acetyltransferase | YDC107_RS13960 | Not Available | Negative | 2855291 - 2855734 | 16538.8 |
| homoserine o-acetyltransferase meta | YDC107_RS13965 | Not Available | Positive | 2855891 - 2856820 | 35729.2 |
| malate synthase a | YDC107_RS13970 | Not Available | Positive | 2857089 - 2858690 | 60333.0 |
| isocitrate lyase | YDC107_RS13975 | Not Available | Positive | 2858720 - 2860024 | 47524.1 |
| bifunctional isocitrate dehydrogenase kinase/phosphatase | YDC107_RS13980 | Not Available | Positive | 2860073 - 2861809 | 67572.2 |
| type iii secretion system effector espl4 | YDC107_RS13985 | Not Available | Negative | 2861778 - 2863964 | 82820.4 |
| glyoxylate bypass operon transcriptional repressor iclr | YDC107_RS13990 | Not Available | Negative | 2864281 - 2865105 | 29741.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





