Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribonuclease v | YDC107_RS13890 | Not Available | Positive | 2840639 - 2841310 | 24673.9 |
| yjag family protein | YDC107_RS13895 | Not Available | Positive | 2841353 - 2841943 | 22613.9 |
| nucleoid-associated protein hu-alpha | YDC107_RS13900 | Not Available | Positive | 2842130 - 2842402 | 9535.51 |
| duf1481 domain-containing protein | YDC107_RS13905 | Not Available | Positive | 2842415 - 2843110 | 26352.9 |
| zinc resistance sensor/chaperone zrap | YDC107_RS13910 | Not Available | Negative | 2843112 - 2843537 | 15231.3 |
| two-component system sensor histidine kinase zras | YDC107_RS13915 | Not Available | Positive | 2843775 - 2845172 | 51164.1 |
| sigma-54-dependent response regulator transcription factor zrar | YDC107_RS13920 | Not Available | Positive | 2845169 - 2846494 | 48329.4 |
| phosphoribosylamine--glycine ligase | YDC107_RS13925 | Not Available | Negative | 2846491 - 2847780 | 45971.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | YDC107_RS13930 | Not Available | Negative | 2847792 - 2849381 | 57357.4 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2849999 - 2851540 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





