Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-thr | Not Available | Not Available | Positive | 2817456 - 2817531 | Not Available |
| elongation factor tu | YDC107_RS13795 | Not Available | Positive | 2817646 - 2818830 | 43316.2 |
| preprotein translocase subunit sece | YDC107_RS13800 | Not Available | Positive | 2819060 - 2819443 | 13644.3 |
| transcription termination/antitermination protein nusg | YDC107_RS13805 | Not Available | Positive | 2819445 - 2819990 | 20532.7 |
| 50s ribosomal protein l11 | YDC107_RS13810 | Not Available | Positive | 2820149 - 2820577 | 14876.2 |
| 50s ribosomal protein l1 | YDC107_RS13815 | Not Available | Positive | 2820581 - 2821285 | 24731.1 |
| 50s ribosomal protein l10 | YDC107_RS13820 | Not Available | Positive | 2821698 - 2822195 | 17712.6 |
| 50s ribosomal protein l7/l12 | YDC107_RS13825 | Not Available | Positive | 2822262 - 2822627 | 12295.8 |
| dna-directed rna polymerase subunit beta | YDC107_RS13830 | Not Available | Positive | 2822947 - 2826975 | 150641.0 |
| dna-directed rna polymerase subunit beta' | YDC107_RS13835 | Not Available | Positive | 2827052 - 2831275 | 155169.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





