Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | Positive | 2808613 - 2810154 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 2810240 - 2810315 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2810509 - 2813412 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2813507 - 2813622 | Not Available |
| udp-n-acetylmuramate dehydrogenase | YDC107_RS13760 | Not Available | Positive | 2813759 - 2814787 | 37832.3 |
| bifunctional biotin--[acetyl-coa-carboxylase] ligase/biotin operon repressor bira | YDC107_RS13765 | Not Available | Positive | 2814784 - 2815746 | 35251.0 |
| type i pantothenate kinase | YDC107_RS13770 | Not Available | Negative | 2815778 - 2816728 | 36347.7 |
| Trna-thr | Not Available | Not Available | Positive | 2817090 - 2817165 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2817174 - 2817258 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 2817375 - 2817449 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





