Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsn | YDC107_RS13550 | Not Available | Negative | 2756434 - 2757393 | 35809.3 |
| dna-binding transcriptional regulator cytr | YDC107_RS13555 | Not Available | Negative | 2757485 - 2758510 | 37822.1 |
| primosomal protein n' | YDC107_RS13560 | Not Available | Negative | 2758666 - 2760864 | 81690.6 |
| 50s ribosomal protein l31 | YDC107_RS13565 | Not Available | Positive | 2761067 - 2761279 | 7871.49 |
| rhs element core protein | YDC107_RS13570 | Not Available | Positive | 2761439 - 2765623 | 157861.0 |
| rhs element protein dsorf-f3 | YDC107_RS28080 | Not Available | Positive | 2765625 - 2765948 | 12096.7 |
| s49 family peptidase | YDC107_RS28765 | Not Available | Negative | 2766070 - 2766411 | 12241.8 |
| is1-like element transposase | YDC107_RS28770 | Not Available | Negative | 2766438 - 2766710 | 10540.8 |
| yiix family permuted papain-like enzyme | YDC107_RS13580 | Not Available | Negative | 2766855 - 2767463 | 23096.9 |
| met regulon transcriptional regulator metj | YDC107_RS13585 | Not Available | Negative | 2767523 - 2767840 | 12141.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





