Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein uspd | YDC107_RS13500 | Not Available | Positive | 2747347 - 2747775 | 16276.0 |
| ferredoxin--nadp(+) reductase | YDC107_RS13505 | Not Available | Negative | 2747780 - 2748526 | 27686.4 |
| class ii fructose-bisphosphatase | YDC107_RS13510 | Not Available | Negative | 2748623 - 2749633 | 35854.6 |
| glycerol kinase glpk | YDC107_RS13515 | Not Available | Negative | 2749768 - 2751276 | 56233.9 |
| glycerol uptake facilitator protein glpf | YDC107_RS13520 | Not Available | Negative | 2751299 - 2752144 | 29781.7 |
| septal ring assembly protein zapb | YDC107_RS13525 | Not Available | Positive | 2752569 - 2752814 | 9635.4 |
| ribonuclease e activity regulator rraa | YDC107_RS13530 | Not Available | Negative | 2752899 - 2753384 | 17361.4 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | YDC107_RS13535 | Not Available | Negative | 2753477 - 2754403 | 33596.0 |
| hslu--hslv peptidase atpase subunit | YDC107_RS13540 | Not Available | Negative | 2754470 - 2755801 | 49583.7 |
| atp-dependent protease subunit hslv | YDC107_RS13545 | Not Available | Negative | 2755811 - 2756341 | 19094.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





