Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| envelope stress response regulator transcription factor cpxr | YDC107_RS13450 | Not Available | Negative | 2739026 - 2739724 | 26313.7 |
| cell-envelope stress modulator cpxp | YDC107_RS13455 | Not Available | Positive | 2739874 - 2740374 | 18952.4 |
| cdf family cation-efflux transporter fief | YDC107_RS13460 | Not Available | Positive | 2740523 - 2741425 | 32915.2 |
| 6-phosphofructokinase | YDC107_RS13465 | Not Available | Positive | 2741606 - 2742568 | 34844.2 |
| sulfate/thiosulfate abc transporter substrate-binding protein sbp | YDC107_RS13470 | Not Available | Positive | 2742888 - 2743877 | 36661.2 |
| cdp-diacylglycerol diphosphatase | YDC107_RS13475 | Not Available | Positive | 2743984 - 2744739 | 28361.2 |
| triose-phosphate isomerase | YDC107_RS13480 | Not Available | Negative | 2744794 - 2745561 | 26973.3 |
| yiiq family protein | YDC107_RS13485 | Not Available | Negative | 2745669 - 2746268 | 21736.1 |
| duf805 domain-containing protein | YDC107_RS13490 | Not Available | Positive | 2746369 - 2746809 | 16543.5 |
| duf406 domain-containing protein | YDC107_RS13495 | Not Available | Positive | 2747021 - 2747320 | 10746.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





