Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnulose-1-phosphate aldolase | YDC107_RS13400 | Not Available | Negative | 2727870 - 2728694 | 30129.1 |
| l-rhamnose isomerase | YDC107_RS13405 | Not Available | Negative | 2728777 - 2730036 | 47159.9 |
| rhamnulokinase | YDC107_RS13410 | Not Available | Negative | 2730033 - 2731502 | 54037.0 |
| hth-type transcriptional activator rhas | YDC107_RS13415 | Not Available | Positive | 2731790 - 2732626 | 32389.3 |
| hth-type transcriptional activator rhar | YDC107_RS13420 | Not Available | Positive | 2732700 - 2733548 | 32415.4 |
| l-rhamnose/proton symporter rhat | YDC107_RS13425 | Not Available | Negative | 2733545 - 2734579 | 37318.1 |
| superoxide dismutase | YDC107_RS13430 | Not Available | Positive | 2734864 - 2735484 | 23080.2 |
| 2-keto-3-deoxygluconate transporter | YDC107_RS13435 | Not Available | Positive | 2735744 - 2736727 | 33743.4 |
| 6-hydroxyaminopurine reductase | YDC107_RS13440 | Not Available | Positive | 2736876 - 2737550 | 25311.0 |
| envelope stress sensor histidine kinase cpxa | YDC107_RS13445 | Not Available | Negative | 2737656 - 2739029 | 51544.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





