Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase o subunit beta | YDC107_RS13350 | Not Available | Negative | 2715140 - 2716042 | 33102.1 |
| formate dehydrogenase-n subunit alpha | YDC107_RS13355 | Not Available | Negative | 2716055 - 2719105 | 112446.0 |
| formate dehydrogenase accessory sulfurtransferase fdhd | YDC107_RS13360 | Not Available | Positive | 2719299 - 2720132 | 30519.7 |
| s49 family peptidase | YDC107_RS13365 | Not Available | Positive | 2720221 - 2720862 | 24445.6 |
| putative frv operon regulatory protein | YDC107_RS13370 | Not Available | Negative | 2720918 - 2722666 | 66060.8 |
| aminopeptidase | YDC107_RS13375 | Not Available | Negative | 2722666 - 2723736 | 38806.7 |
| pts fructose-like transporter subunit iibc | YDC107_RS13380 | Not Available | Negative | 2723726 - 2725177 | 51162.5 |
| pts fructose transporter subunit iia | YDC107_RS13385 | Not Available | Negative | 2725188 - 2725634 | 16104.4 |
| carbohydrate porin | YDC107_RS13390 | Not Available | Positive | 2726111 - 2727505 | 51946.3 |
| l-rhamnose mutarotase | YDC107_RS13395 | Not Available | Negative | 2727546 - 2727860 | 12235.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





