Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-flavin reductase | YDC107_RS13050 | Not Available | Positive | 2653214 - 2653915 | 26227.4 |
| acetyl-coa c-acyltransferase fada | YDC107_RS13055 | Not Available | Negative | 2654098 - 2655261 | 40862.7 |
| fatty acid oxidation complex subunit alpha fadb | YDC107_RS13060 | Not Available | Negative | 2655271 - 2657460 | 79646.5 |
| xaa-pro dipeptidase | YDC107_RS13065 | Not Available | Positive | 2657650 - 2658981 | 50178.9 |
| impact family protein | YDC107_RS13070 | Not Available | Positive | 2658981 - 2659595 | 21708.1 |
| trk system potassium transporter trkh | YDC107_RS13075 | Not Available | Positive | 2659634 - 2661085 | 52976.9 |
| menaquinone-dependent protoporphyrinogen ix dehydrogenase | YDC107_RS13080 | Not Available | Positive | 2661097 - 2661642 | 21200.4 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2662020 - 2663561 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 2663630 - 2663706 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 2663749 - 2663824 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





