Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna recombination protein rmuc | YDC107_RS13000 | Not Available | Positive | 2644020 - 2645447 | 54753.6 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | YDC107_RS13005 | Not Available | Positive | 2645542 - 2646297 | 28074.8 |
| ubiquinone biosynthesis protein ubij | YDC107_RS13010 | Not Available | Positive | 2646311 - 2646916 | 22123.8 |
| ubiquinone biosynthesis regulatory protein kinase ubib | YDC107_RS13015 | Not Available | Positive | 2646913 - 2648553 | 63190.3 |
| sec-independent protein translocase subunit tata | YDC107_RS13020 | Not Available | Positive | 2648632 - 2648901 | 9664.5 |
| sec-independent protein translocase protein tatb | YDC107_RS13025 | Not Available | Positive | 2648905 - 2649420 | 18451.8 |
| sec-independent protein translocase subunit tatc | YDC107_RS13030 | Not Available | Positive | 2649423 - 2650199 | 28877.9 |
| 3'-5' ssdna/rna exonuclease tatd | YDC107_RS13035 | Not Available | Positive | 2650241 - 2651023 | 29056.6 |
| transcription/translation regulatory transformer protein rfah | YDC107_RS13040 | Not Available | Negative | 2651020 - 2651508 | 18359.3 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | YDC107_RS13045 | Not Available | Positive | 2651675 - 2653168 | 55627.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





