Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysophospholipase l2 | YDC107_RS12950 | Not Available | Positive | 2633749 - 2634771 | 38991.4 |
| sugar/pyridoxal phosphate phosphatase yigl | YDC107_RS12955 | Not Available | Positive | 2634779 - 2635579 | 29737.5 |
| biotin transporter | YDC107_RS12960 | Not Available | Positive | 2635655 - 2636554 | 33741.0 |
| hth-type transcriptional regulator metr | YDC107_RS12965 | Not Available | Negative | 2636442 - 2637395 | 35645.1 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | YDC107_RS12970 | Not Available | Positive | 2637513 - 2639774 | 84655.1 |
| hypothetical protein | YDC107_RS28395 | Not Available | Negative | 2639943 - 2640188 | 9340.26 |
| hypothetical protein | YDC107_RS12980 | Not Available | Negative | 2640263 - 2640520 | 9703.81 |
| type vi secretion system tube protein tssd | YDC107_RS12985 | Not Available | Negative | 2640517 - 2641650 | 42309.0 |
| dienelactone hydrolase family protein | YDC107_RS12990 | Not Available | Negative | 2642042 - 2642854 | 29397.7 |
| uridine phosphorylase | YDC107_RS12995 | Not Available | Positive | 2643118 - 2643879 | 27151.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





