Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ydfc | YDC107_RS22525 | Not Available | Negative | 4639079 - 4639297 | 8398.05 |
| protein ydfb | YDC107_RS28690 | Not Available | Negative | 4639327 - 4639455 | 4687.31 |
| Hypothetical protein | YDC107_RS22530 | Not Available | Negative | 4639457 - 4639612 | 5705.6 |
| Putative ci repressor | YDC107_RS22535 | Not Available | Negative | 4639885 - 4640601 | 26424.8 |
| Putative cro anti-repressor | YDC107_RS22540 | Not Available | Positive | 4640651 - 4640866 | 8226.94 |
| Cii protein | YDC107_RS22545 | Not Available | Positive | 4640863 - 4641288 | 16177.6 |
| Replication protein | YDC107_RS22550 | Not Available | Positive | 4641311 - 4642273 | 35897.5 |
| Lygf | YDC107_RS22555 | Not Available | Positive | 4642314 - 4642736 | 16283.6 |
| Hypothetical protein | YDC107_RS22560 | Not Available | Positive | 4642733 - 4642987 | 9627.59 |
| Hypothetical protein | YDC107_RS22565 | Not Available | Positive | 4642980 - 4643291 | 12060.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





