Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron donor protein cyay | YDC107_RS12855 | Not Available | Negative | 2616656 - 2616976 | 12232.0 |
| s49 family peptidase | YDC107_RS12860 | Not Available | Negative | 2617099 - 2617253 | 6278.86 |
| lps translocon maturation chaperone lptm | YDC107_RS12865 | Not Available | Positive | 2617442 - 2617645 | 7177.59 |
| diaminopimelate epimerase | YDC107_RS12870 | Not Available | Positive | 2617682 - 2618506 | 30210.4 |
| duf484 domain-containing protein | YDC107_RS12875 | Not Available | Positive | 2618503 - 2619210 | 26756.4 |
| tyrosine recombinase xerc | YDC107_RS12880 | Not Available | Positive | 2619207 - 2620103 | 33869.7 |
| 5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase yigb | YDC107_RS12885 | Not Available | Positive | 2620103 - 2620819 | 27123.4 |
| dna helicase ii | YDC107_RS12890 | Not Available | Positive | 2620903 - 2623065 | 82008.7 |
| s-adenosyl-l-methionine hydroxide adenosyltransferase family protein | YDC107_RS12895 | Not Available | Negative | 2623110 - 2624012 | 32653.9 |
| phosphodiester glycosidase family protein | YDC107_RS12900 | Not Available | Negative | 2624095 - 2624859 | 28010.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





