Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-his | Not Available | Not Available | Positive | 2605466 - 2605541 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 2605562 - 2605648 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2605691 - 2605767 | Not Available |
| anaerobic sulfatase maturase | YDC107_RS12820 | Not Available | Positive | 2605914 - 2607149 | 46441.7 |
| arylsulfatase asla | YDC107_RS12825 | Not Available | Negative | 2607251 - 2608906 | 60703.0 |
| protoheme ix biogenesis protein hemy | YDC107_RS12830 | Not Available | Negative | 2609585 - 2610781 | 45247.7 |
| uroporphyrinogen-iii c-methyltransferase | YDC107_RS12835 | Not Available | Negative | 2610784 - 2611983 | 43484.9 |
| uroporphyrinogen-iii synthase | YDC107_RS12840 | Not Available | Negative | 2612005 - 2612745 | 27882.6 |
| hydroxymethylbilane synthase | YDC107_RS12845 | Not Available | Negative | 2612742 - 2613683 | 33867.9 |
| class i adenylate cyclase | YDC107_RS12850 | Not Available | Positive | 2614070 - 2616616 | 97735.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





