Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| non-hydrolyzing udp-n-acetylglucosamine 2-epimerase | YDC107_RS12755 | Not Available | Positive | 2594993 - 2596123 | 42219.0 |
| udp-n-acetyl-d-mannosamine dehydrogenase | YDC107_RS12760 | Not Available | Positive | 2596120 - 2597382 | 45831.4 |
| dtdp-4-amino-4,6-dideoxy-d-galactose acyltransferase | YDC107_RS12765 | Not Available | Positive | 2597423 - 2598097 | 24175.7 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | YDC107_RS12770 | Not Available | Positive | 2598102 - 2599232 | 41922.4 |
| lipid iii flippase wzxe | YDC107_RS12775 | Not Available | Positive | 2599234 - 2600484 | 44996.3 |
| tdp-n-acetylfucosamine:lipid ii n-acetylfucosaminyltransferase | YDC107_RS12780 | Not Available | Positive | 2600481 - 2601560 | 40544.8 |
| eca oligosaccharide polymerase | YDC107_RS12785 | Not Available | Positive | 2601557 - 2602909 | 51524.2 |
| lipopolysaccharide n-acetylmannosaminouronosyltransferase | YDC107_RS12790 | Not Available | Positive | 2602912 - 2603652 | 27963.8 |
| bifunctional threonine/serine apc transporter thrp | YDC107_RS12795 | Not Available | Positive | 2603843 - 2605228 | 50474.2 |
| Trna-arg | Not Available | Not Available | Positive | 2605331 - 2605407 | Not Available |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





