Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yifb family mg chelatase-like aaa atpase | YDC107_RS12650 | Not Available | Negative | 2573463 - 2574983 | 55288.7 |
| ilv operon leader peptide | YDC107_RS12655 | Not Available | Positive | 2575336 - 2575434 | 3231.32 |
| peptide ilvx | YDC107_RS12660 | Not Available | Positive | 2575521 - 2575571 | 1910.25 |
| acetolactate synthase 2 catalytic subunit | YDC107_RS12665 | Not Available | Positive | 2575574 - 2577220 | 59170.2 |
| acetolactate synthase 2 small subunit | YDC107_RS12670 | Not Available | Positive | 2577217 - 2577480 | 9703.74 |
| branched-chain-amino-acid transaminase | YDC107_RS12675 | Not Available | Positive | 2577500 - 2578429 | 34095.6 |
| dihydroxy-acid dehydratase | YDC107_RS12680 | Not Available | Positive | 2578494 - 2580344 | 65534.5 |
| threonine ammonia-lyase, biosynthetic | YDC107_RS12685 | Not Available | Positive | 2580347 - 2581891 | 56201.5 |
| hth-type transcriptional activator ilvy | YDC107_RS12690 | Not Available | Negative | 2581888 - 2582778 | 33064.1 |
| ketol-acid reductoisomerase | YDC107_RS12695 | Not Available | Positive | 2582928 - 2584403 | 54072.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





