Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug transporter subunit mdtd | YDC107_RS12600 | Not Available | Negative | 2564200 - 2565627 | 51464.9 |
| fadr/gntr family transcriptional regulator | YDC107_RS12605 | Not Available | Negative | 2565650 - 2566342 | 26105.6 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2566823 - 2568364 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 2568450 - 2568525 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2568719 - 2571622 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2571717 - 2571832 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 2571887 - 2571963 | Not Available |
| Trna-trp | Not Available | Not Available | Positive | 2571972 - 2572047 | Not Available |
| s49 family peptidase | YDC107_RS12640 | Not Available | Negative | 2572142 - 2572981 | 31499.6 |
| macrodomain ori organization protein maop | YDC107_RS12645 | Not Available | Positive | 2573100 - 2573438 | 13134.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





