Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase rava stimulator viaa | YDC107_RS12540 | Not Available | Negative | 2552456 - 2553907 | 55910.6 |
| atpase rava | YDC107_RS12545 | Not Available | Negative | 2553901 - 2555397 | 56418.1 |
| low affinity potassium transporter kup | YDC107_RS12550 | Not Available | Positive | 2555620 - 2557488 | 69340.4 |
| is200/is605-like element is200c family transposase | YDC107_RS12555 | Not Available | Positive | 2557672 - 2558130 | 18028.0 |
| d-ribose pyranase | YDC107_RS12570 | Not Available | Positive | 2558366 - 2558785 | 15284.4 |
| ribose abc transporter atp-binding protein rbsa | YDC107_RS12575 | Not Available | Positive | 2558793 - 2560298 | 55045.0 |
| ribose abc transporter permease | YDC107_RS12580 | Not Available | Positive | 2560303 - 2561268 | 33454.0 |
| ribose abc transporter substrate-binding protein rbsb | YDC107_RS12585 | Not Available | Positive | 2561293 - 2562180 | 30812.1 |
| ribokinase | YDC107_RS12590 | Not Available | Positive | 2562309 - 2563238 | 32259.3 |
| ribose operon transcriptional repressor rbsr | YDC107_RS12595 | Not Available | Positive | 2563242 - 2564234 | 36614.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





