Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter atp-binding protein pstb | YDC107_RS12440 | Not Available | Negative | 2531992 - 2532765 | 29028.9 |
| phosphate abc transporter permease psta | YDC107_RS12445 | Not Available | Negative | 2532856 - 2533746 | 32275.7 |
| phosphate abc transporter permease pstc | YDC107_RS12450 | Not Available | Negative | 2533746 - 2534705 | 34123.1 |
| phosphate abc transporter substrate-binding protein psts | YDC107_RS12455 | Not Available | Negative | 2534791 - 2535831 | 37011.8 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | YDC107_RS12460 | Not Available | Negative | 2536145 - 2537974 | 66870.3 |
| bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmu | YDC107_RS12465 | Not Available | Negative | 2538136 - 2539506 | 49209.1 |
| f0f1 atp synthase subunit epsilon | YDC107_RS12470 | Not Available | Negative | 2539857 - 2540276 | 15069.2 |
| f0f1 atp synthase subunit beta | YDC107_RS12475 | Not Available | Negative | 2540297 - 2541679 | 50328.5 |
| f0f1 atp synthase subunit gamma | YDC107_RS12480 | Not Available | Negative | 2541706 - 2542569 | 31579.3 |
| f0f1 atp synthase subunit alpha | YDC107_RS12485 | Not Available | Negative | 2542620 - 2544161 | 55225.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





