Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4'-phosphopantetheinyl transferase family protein | YDC107_RS12385 | Not Available | Positive | 2520260 - 2521009 | 27680.3 |
| class i chromate reductase yief | YDC107_RS12390 | Not Available | Positive | 2521031 - 2521597 | 20350.8 |
| adenine permease adep | YDC107_RS12395 | Not Available | Negative | 2521651 - 2522988 | 46845.8 |
| 6-phosphogluconate phosphatase | YDC107_RS12400 | Not Available | Positive | 2523155 - 2523820 | 24840.9 |
| t3ss effector espy4 | YDC107_RS12405 | Not Available | Negative | 2523957 - 2526365 | 93154.1 |
| pentapeptide repeat-containing protein | YDC107_RS12410 | Not Available | Positive | 2526671 - 2527858 | 46277.3 |
| s49 family peptidase | YDC107_RS28390 | Not Available | Positive | 2528082 - 2528156 | 2724.32 |
| hypothetical protein | YDC107_RS12415 | Not Available | Negative | 2528328 - 2530712 | 92880.2 |
| s49 family peptidase | YDC107_RS12420 | Not Available | Negative | 2530679 - 2530826 | 5503.48 |
| phosphate signaling complex protein phou | YDC107_RS12435 | Not Available | Negative | 2531252 - 2531977 | 27443.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





